About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7927989_7929851_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7927989 - 7929851
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGGAGA
5'SS Class:
major
3'SS Sequence:
GGTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTAAC
U12 Branch Point Sequence:
GCTCCAGTAACA
Flanking Amino Acid:
NECWNGSAKSRYDFAVTGNG
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
63.5
42.2
Major BPS
54.4
0.11
1.2
57
36.4
Major PPT
80
0.67
0.8
77.7
36.7
Minor 5ss
34.1
-1.8
2.9
40.7
45.2
Minor BPS
47.7
-0.1
2.2
62.92
42.8

Associated Gene:

Gene:
GPC4
Ensembl Gene ID:
ENSAPLG00000027678
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039431
7926965 - 7930823
3859