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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7979273_7979362_R

Intron Information:

Intron Rank:
129470
Intron Class:
major
Intron Phase:
Intron Coordinates:
7979273 - 7979362
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTCTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCATCTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.8
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.4
0.8
0.9
77.2
41.6
Minor 5ss
34.8
-1.7
3.1
50.1
46.1
Minor BPS
52.6
0.06
1.7
64.39
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016855
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040717
7978442 - 7988399
9958