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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7986680_7987167_R

Intron Information:

Intron Rank:
129468
Intron Class:
major
Intron Phase:
Intron Coordinates:
7986680 - 7987167
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAATC
5'SS Class:
major
3'SS Sequence:
CTTTTCAACAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TACTTTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
74
34.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
63.5
0.3
1.1
64.6
34.6
Minor 5ss
43.5
-0.7
3
60.5
44.2
Minor BPS
60.9
0.34
1.5
68.03
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016855
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026391
7986631 - 7988399
1769