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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8243745_8252918_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8243745 - 8252918
Intron Length:
9174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TTTCTATACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCTATACAC
Flanking Amino Acid:
MLPGAQLQPITTFPVTPSLA
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
73.1
31.9
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
78
0.63
0.9
73.4
35.2
Minor 5ss
43.1
-0.8
2.8
58.5
40.5
Minor BPS
52.6
0.06
2
72.43
38.5

Associated Gene:

Gene:
MBNL3
Ensembl Gene ID:
ENSAPLG00000020011
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003789
8214806 - 8269373
54568
ENSAPLT00000032301
8214806 - 8271665
56860
ENSAPLT00000030979
8214806 - 8268166
53361
ENSAPLT00000024783
8214806 - 8271627
56822
ENSAPLT00000022002
8214806 - 8268166
53361
ENSAPLT00000042185
8214806 - 8268166
53361