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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8254909_8262979_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8254909 - 8262979
Intron Length:
8071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTGTCTTTAATG
Flanking Amino Acid:
QVNQTAAAAMALPPGALQPL
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
74.2
0.54
0.8
68
31
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
77
0.71
1.2
74.76
38.2

Associated Gene:

Gene:
MBNL3
Ensembl Gene ID:
ENSAPLG00000020011
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042185
8214806 - 8268166
53361
ENSAPLT00000032301
8214806 - 8271665
56860
ENSAPLT00000030979
8214806 - 8268166
53361
ENSAPLT00000024783
8214806 - 8271627
56822