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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8265478_8267705_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8265478 - 8267705
Intron Length:
2228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCCGAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CCTCCCGTATGT
Flanking Amino Acid:
VLCMTPTASVVPMMHGATPT
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80.5
34.9
Major BPS
65
0.37
1.3
76.1
38
Major PPT
60.4
0.23
1.1
62.8
32.3
Minor 5ss
44.9
-0.5
3.2
63.2
43.8
Minor BPS
42.4
-0.5
2.4
60.49
48.9

Associated Gene:

Gene:
MBNL3
Ensembl Gene ID:
ENSAPLG00000020011
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042185
8214806 - 8268166
53361
ENSAPLT00000030979
8214806 - 8268166
53361
ENSAPLT00000024783
8214806 - 8271627
56822