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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8269374_8271504_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
8269374 - 8271504
Intron Length:
2131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
CTTTCTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ACATTCTTACTT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
67.3
39.4
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
86.5
0.82
0.7
81.2
23.9
Minor 5ss
42.7
-0.8
2.8
58.3
40.4
Minor BPS
58.8
0.36
1.6
70.25
41.4

Associated Gene:

Gene:
MBNL3
Ensembl Gene ID:
ENSAPLG00000020011
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024783
8214806 - 8271627
56822