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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8292273_8294014_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8292273 - 8294014
Intron Length:
1742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCCG
5'SS Class:
major
3'SS Sequence:
ATTGTTTGATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GATTGTTTGATC
Flanking Amino Acid:
YSLVNQQSFQDIKPMRDQIV
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
57.2
47.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
71.1
0.48
1.1
70.8
43.8
Minor 5ss
43.7
-0.7
2.9
57.5
46.7
Minor BPS
52.9
0.07
1.7
62.63
37.4

Associated Gene:

Gene:
RAP2C
Ensembl Gene ID:
ENSAPLG00000004026
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004135
8292000 - 8294856
2857