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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8294176_8294819_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8294176 - 8294819
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTCAGCCAA
5'SS Class:
weak_major
3'SS Sequence:
TTTAAAAACAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAAAG
Flanking Amino Acid:
AQEWGCPFMETKKNCGTETE
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.6
0.16
1.6
56
44.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
51.7
0.04
1.2
50.5
40.9
Minor 5ss
34
-1.8
3
38.6
39.8
Minor BPS
60.8
0.2
1.6
69.04
38.3

Associated Gene:

Gene:
RAP2C
Ensembl Gene ID:
ENSAPLG00000004026
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004135
8292000 - 8294856
2857