About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8316871_8316961_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8316871 - 8316961
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
GTGCCCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
TGGCCTCTAACC
Flanking Amino Acid:
RRCSSPTCCSLSWVISTRRQ
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
59.6
39.4
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
65.7
0.35
0.9
57.7
33.3
Minor 5ss
31.5
-2.1
3.6
39.6
45.9
Minor BPS
55.7
0.16
1.7
65.46
39.8

Associated Gene:

Gene:
FRMD7
Ensembl Gene ID:
ENSAPLG00000019564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047497
8314906 - 8321983
7078