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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8317389_8318519_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8317389 - 8318519
Intron Length:
1131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
TCCGTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAC
U12 Branch Point Sequence:
CCCGGTATAACT
Flanking Amino Acid:
L*HTWGCWSCGAIQRSTHST
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
60.6
46.7
Major BPS
60.2
0.25
1.3
64
39.8
Major PPT
79.1
0.66
0.8
72.7
32.1
Minor 5ss
42.8
-0.8
2.9
47.3
48.1
Minor BPS
43.1
-0.4
2.1
55.33
47.2

Associated Gene:

Gene:
FRMD7
Ensembl Gene ID:
ENSAPLG00000019564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047497
8314906 - 8321983
7078