About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8318616_8318732_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8318616 - 8318732
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
CCTGGCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GCGCCCCTGACA
Flanking Amino Acid:
IFSSSSMQTFLHCARTRWSS
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
66
45.2
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
61.3
0.26
1
53.4
35.8
Minor 5ss
38
-1.3
2.8
52.4
44.2
Minor BPS
49.6
-0
1.7
57.64
41.5

Associated Gene:

Gene:
FRMD7
Ensembl Gene ID:
ENSAPLG00000019564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047497
8314906 - 8321983
7078