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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8318897_8319103_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8318897 - 8319103
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGCCGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGCTCACACCT
Flanking Amino Acid:
CAAKARVSATVGGHRGSCWS
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.9
35.4
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
72.9
0.52
0.9
65.6
36
Minor 5ss
37.3
-1.4
3.3
50.9
45.8
Minor BPS
41.7
-0.5
2
57.95
44.8

Associated Gene:

Gene:
FRMD7
Ensembl Gene ID:
ENSAPLG00000019564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047497
8314906 - 8321983
7078