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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8319173_8319259_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8319173 - 8319259
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGAGG
5'SS Class:
major
3'SS Sequence:
CTCGGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
TGGCCCTGCATC
Flanking Amino Acid:
RRR*RACPLRGSTMHPTTMR
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
55.4
48.8
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
72.9
0.52
0.9
65
36.3
Minor 5ss
36.1
-1.6
3.3
48.9
46.9
Minor BPS
47.2
-0.2
1.9
57.54
41.2

Associated Gene:

Gene:
FRMD7
Ensembl Gene ID:
ENSAPLG00000019564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047497
8314906 - 8321983
7078