About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8319336_8319471_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8319336 - 8319471
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACACAC
U12 Branch Point Sequence:
TTTTTTTCCACC
Flanking Amino Acid:
PRTS*QMCPSRWKSCAWLTA
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
71.5
38.6
Major BPS
49.1
-0
0.9
56.3
29.4
Major PPT
84.4
0.77
0.8
79.1
34.3
Minor 5ss
41.6
-0.9
2.7
54
43.2
Minor BPS
55
0.14
2
73.67
37.7

Associated Gene:

Gene:
FRMD7
Ensembl Gene ID:
ENSAPLG00000019564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047497
8314906 - 8321983
7078