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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8333850_8338393_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8333850 - 8338393
Intron Length:
4544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGTAT
5'SS Class:
major
3'SS Sequence:
CATTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CATTCTTTTACA
Flanking Amino Acid:
VTKYYGSYLKGTKLWIIMEY
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
68.5
38.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
85.6
0.8
0.8
79.7
32
Minor 5ss
37.1
-1.5
3.6
55.1
49.2
Minor BPS
65.5
0.48
1.6
71.96
40.5

Associated Gene:

Gene:
STK26
Ensembl Gene ID:
ENSAPLG00000004174
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020324
8326278 - 8360899
34622
ENSAPLT00000004308
8326703 - 8339049
12347