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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8338625_8339019_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8338625 - 8339019
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAATT
Flanking Amino Acid:
MLCLPQAVGQNHRADPEELF
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.9
41.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
91.3
0.93
0.6
84.1
30.8
Minor 5ss
32.4
-2
3.2
43.2
44
Minor BPS
65.2
0.55
1.5
79.05
38

Associated Gene:

Gene:
STK26
Ensembl Gene ID:
ENSAPLG00000004174
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004308
8326703 - 8339049
12347