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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8338625_8354238_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8338625 - 8354238
Intron Length:
15614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAATT
Flanking Amino Acid:
PVAVQVPGMQNHRADPEELF
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
91.3
0.93
0.6
84.1
30.8
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
65.2
0.55
1.5
79.05
38

Associated Gene:

Gene:
STK26
Ensembl Gene ID:
ENSAPLG00000004174
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020324
8326278 - 8360899
34622