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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8354361_8360595_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8354361 - 8360595
Intron Length:
6235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAA
U12 Branch Point Sequence:
CCGCGCTGAAGC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
54.6
0.12
1.1
46.7
38.9
Major PPT
86.2
0.81
0.8
77.7
36.7
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
41
-0.7
2
43.89
44

Associated Gene:

Gene:
STK26
Ensembl Gene ID:
ENSAPLG00000004174
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020324
8326278 - 8360899
34622