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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8378685_8379495_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8378685 - 8379495
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTCTGTTTAAAA
Flanking Amino Acid:
MFGEQNENPQSCAKDDSMNA
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
87.5
0.84
0.7
85.1
29.7
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
60
0.31
1.9
71.99
40.5

Associated Gene:

Gene:
IL13RA1
Ensembl Gene ID:
ENSAPLG00000004476
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004594
8378565 - 8391902
13338