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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8382043_8382453_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8382043 - 8382453
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATTTTTAATT
Flanking Amino Acid:
VCASKNPTTLVQPATPKIVE
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.1
0.86
0.8
86
32.8
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
74
0.83
1.1
81.34
34.2

Associated Gene:

Gene:
IL13RA1
Ensembl Gene ID:
ENSAPLG00000004476
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004594
8378565 - 8391902
13338