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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8385012_8386209_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8385012 - 8386209
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTGT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
CATCTTTCAATT
Flanking Amino Acid:
RWVETSVLPKGIPGTAAVGL
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
70.4
42.5
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
44
-0.7
3.3
65
46.2
Minor BPS
51.8
0.14
1.5
66.08
39.1

Associated Gene:

Gene:
IL13RA1
Ensembl Gene ID:
ENSAPLG00000004476
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004594
8378565 - 8391902
13338