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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8386346_8388157_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8386346 - 8388157
Intron Length:
1812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
CATCTAAACCTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TTTTCCCCATCT
Flanking Amino Acid:
VIDEVPQNQRQWSKSLFRVT
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.2
35.7
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
57.4
0.17
0.9
48.8
38.2
Minor 5ss
44.1
-0.6
2.8
56.3
41.9
Minor BPS
56.5
0.28
2.1
85.43
40.6

Associated Gene:

Gene:
IL13RA1
Ensembl Gene ID:
ENSAPLG00000004476
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004594
8378565 - 8391902
13338