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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8388316_8391814_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8388316 - 8391814
Intron Length:
3499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATACTGATAATT
Flanking Amino Acid:
CWAVAAVAAAGAKVLPPPSN
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
85.3
0.79
0.6
84.5
23.4
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
45.2
-0.2
2.2
65.35
39.2

Associated Gene:

Gene:
IL13RA1
Ensembl Gene ID:
ENSAPLG00000004476
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004594
8378565 - 8391902
13338