About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8443080_8443493_R


Intron Information:

Intron Rank:
19

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
8443080 - 8443493

Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAAAGCAA

5'SS Class:
major

3'SS Sequence:
GATATCATTTTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATATCAT

U12 Branch Point Sequence:
TCTATCATGATA

Flanking Amino Acid:
HNQSPEFYDEIKIELPIHLH

Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.4
0.69
1
68.2
38.4

Major BPS
79.4
0.73
1
80.1
32

Major PPT
68.1
0.41
1
63.8
42.3

Minor 5ss
29.4
-2.4
3.3
37.9
46.9

Minor BPS
50.2
-0
1.6
63.2
37.2

Associated Gene:

Gene:
DOCK11

Ensembl Gene ID:

Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

8399530 - 8477431
77902

8399313 - 8477766
78454