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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8453177_8453632_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8453177 - 8453632
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTGAACA
Flanking Amino Acid:
EKKDTVESAQDDESSMQGKS
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
87
0.83
0.7
81.4
30.6
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
67.7
0.55
1.4
75.45
36.1

Associated Gene:

Gene:
DOCK11
Ensembl Gene ID:
ENSAPLG00000004495
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038581
8399313 - 8477766
78454
ENSAPLT00000004898
8399530 - 8477431
77902