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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8453811_8454948_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8453811 - 8454948
Intron Length:
1138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTGTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAA
U12 Branch Point Sequence:
TGTAACACAAAG
Flanking Amino Acid:
FLDACNDVVQCPKMRRYAFE
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
51.9
0.05
0.9
59
27.3
Major PPT
83.5
0.75
0.9
76.9
42.1
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
41.3
-0.8
2
49.47
42.9

Associated Gene:

Gene:
DOCK11
Ensembl Gene ID:
ENSAPLG00000004495
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038581
8399313 - 8477766
78454
ENSAPLT00000004898
8399530 - 8477431
77902