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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8462120_8477329_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8462120 - 8477329
Intron Length:
15210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTCATCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTATTCATCC
Flanking Amino Acid:
SEAVRSSFVLEKTKVVEPLD
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
77.4
0.62
0.9
69.9
35.7
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
51.8
0.04
2
71.6
39.6

Associated Gene:

Gene:
DOCK11
Ensembl Gene ID:
ENSAPLG00000004495
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038581
8399313 - 8477766
78454
ENSAPLT00000004898
8399530 - 8477431
77902