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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8485688_8487127_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8485688 - 8487127
Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCTTTCTATCT
Flanking Amino Acid:
NSSSQIKASFSHDFTYIVSG
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
71.6
40.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
83.6
0.76
0.7
82.4
28.3
Minor 5ss
31.3
-2.1
3.1
38.3
46.6
Minor BPS
52
0.14
1.9
75.57
41.7

Associated Gene:

Gene:
WDR44
Ensembl Gene ID:
ENSAPLG00000010695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024464
8484235 - 8500707
16473
ENSAPLT00000011206
8483429 - 8508300
24872
ENSAPLT00000039642
8484235 - 8501537
17303