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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8487696_8487866_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8487696 - 8487866
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAAAATTTAATT
Flanking Amino Acid:
DGRCIFYDTEHLKYHTQIHV
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.8
0.78
0.8
81.8
34.9
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
59.1
0.36
1.5
72.01
38.6

Associated Gene:

Gene:
WDR44
Ensembl Gene ID:
ENSAPLG00000010695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024464
8484235 - 8500707
16473
ENSAPLT00000011206
8483429 - 8508300
24872
ENSAPLT00000039642
8484235 - 8501537
17303