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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8488799_8489612_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8488799 - 8489612
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
TTTTGTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTGTTAATAACC
Flanking Amino Acid:
ADLLDLSWSKNYFLLSSSMD
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
66.8
38.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
85
0.79
0.8
80.2
32
Minor 5ss
32.8
-2
3.3
42.1
39
Minor BPS
49.7
-0
1.9
63.89
41.6

Associated Gene:

Gene:
WDR44
Ensembl Gene ID:
ENSAPLG00000010695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024464
8484235 - 8500707
16473
ENSAPLT00000011206
8483429 - 8508300
24872
ENSAPLT00000039642
8484235 - 8501537
17303