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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8491208_8492598_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8491208 - 8492598
Intron Length:
1391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TTTAACTTAAAC
Flanking Amino Acid:
VVQDLSGEHMGAVWTMKFSH
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
91.8
0.94
0.7
87.5
30
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
66.8
0.51
1.6
78.08
36.6

Associated Gene:

Gene:
WDR44
Ensembl Gene ID:
ENSAPLG00000010695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024464
8484235 - 8500707
16473
ENSAPLT00000011206
8483429 - 8508300
24872
ENSAPLT00000039642
8484235 - 8501537
17303