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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8492751_8493711_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8492751 - 8493711
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCCTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
TACTTCCAAATT
Flanking Amino Acid:
VNKVKSVRDEVFHTDQDDPS
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.2
81.4
32.7
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
72.4
0.51
0.9
70.3
36.4
Minor 5ss
31.4
-2.1
2.5
36.7
40.4
Minor BPS
48.9
-0
2
68.95
42.5

Associated Gene:

Gene:
WDR44
Ensembl Gene ID:
ENSAPLG00000010695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039642
8484235 - 8501537
17303
ENSAPLT00000024464
8484235 - 8500707
16473
ENSAPLT00000011206
8483429 - 8508300
24872