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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8494205_8495123_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8494205 - 8495123
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATACTAAACA
Flanking Amino Acid:
HIMRRTKEYVSNDAAQSDDE
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.7
0.51
0.9
65.4
40.8
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
64.3
0.45
1.9
77.47
39

Associated Gene:

Gene:
WDR44
Ensembl Gene ID:
ENSAPLG00000010695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039642
8484235 - 8501537
17303
ENSAPLT00000024464
8484235 - 8500707
16473
ENSAPLT00000011206
8483429 - 8508300
24872