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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8497770_8498259_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8497770 - 8498259
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGCTAA
5'SS Class:
major
3'SS Sequence:
TTCATTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTGTTTAACA
Flanking Amino Acid:
QEMKQDDSKEIIDSIIEESQ
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
72.3
35.4
Major BPS
100
1.24
0.5
100
0
Major PPT
82.3
0.73
0.7
81.3
30.6
Minor 5ss
39.5
-1.2
2.8
47.4
48
Minor BPS
70.4
0.64
1.7
79.83
36.4

Associated Gene:

Gene:
WDR44
Ensembl Gene ID:
ENSAPLG00000010695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039642
8484235 - 8501537
17303
ENSAPLT00000024464
8484235 - 8500707
16473
ENSAPLT00000011206
8483429 - 8508300
24872