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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8498335_8498931_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8498335 - 8498931
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTGTTCTTACTA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
86.5
0.82
0.6
83.5
24.9
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
66
0.5
1.6
74.21
38.4

Associated Gene:

Gene:
WDR44
Ensembl Gene ID:
ENSAPLG00000010695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039642
8484235 - 8501537
17303