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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8498335_8500690_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8498335 - 8500690
Intron Length:
2356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATCTCTT
5'SS Class:
weak_major
3'SS Sequence:
CTTTTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTGTTCTTACTA
Flanking Amino Acid:
MDLDSKLHKAG
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
67.1
43.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
86.5
0.82
0.6
83.5
24.9
Minor 5ss
56.8
0.23
2.5
73.1
38.5
Minor BPS
66
0.5
1.6
74.21
38.4

Associated Gene:

Gene:
WDR44
Ensembl Gene ID:
ENSAPLG00000010695
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024464
8484235 - 8500707
16473