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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8553347_8573755_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8553347 - 8573755
Intron Length:
20409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
CTTTGGTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGCATTTTATCT
Flanking Amino Acid:
RNVALGSCHEQAVTNLSGMD
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71
34.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.3
0.48
1
65.7
39.9
Minor 5ss
35
-1.7
3
46.1
42.9
Minor BPS
53.1
0.17
1.6
68.51
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010487
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010949
8553282 - 8622228
68947