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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8573828_8603199_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8573828 - 8603199
Intron Length:
29372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCATCTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTTCTCATCT
Flanking Amino Acid:
RGEVSAVLHDRSLVEEEDPH
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.3
0.55
0.8
72.7
31.9
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
59.6
0.38
1.8
79.68
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010487
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023255
8573685 - 8622228
48544
ENSAPLT00000010949
8553282 - 8622228
68947