About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8587306_8587775_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8587306 - 8587775
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTATTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTTACTGTTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
72.7
0.51
0.9
66.9
38.6
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
48.5
-0
2.3
76.16
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010487
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019632
8587261 - 8621647
34387