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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8587889_8603199_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8587889 - 8603199
Intron Length:
15311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCATCTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTTCTCATCT
Flanking Amino Acid:
SRSSPLSPAYISLVEEEDPH
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
74.4
36.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.3
0.55
0.8
72.7
31.9
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
59.6
0.38
1.8
79.68
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010487
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019632
8587261 - 8621647
34387