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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8590488_8603199_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8590488 - 8603199
Intron Length:
12712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTATAT
5'SS Class:
major
3'SS Sequence:
CTCATCTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTTCTCATCT
Flanking Amino Acid:
RVLCFRKLVSRSLVEEEDPH
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
70.5
36.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.3
0.55
0.8
72.7
31.9
Minor 5ss
38.3
-1.3
3.4
55.8
48.4
Minor BPS
59.6
0.38
1.8
79.68
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010487
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034771
8590432 - 8621647
31216