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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8606692_8611529_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8606692 - 8611529
Intron Length:
4838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTACTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTACTTAATA
Flanking Amino Acid:
DFCKVFLISGVSLENCVEVG
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.5
40.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
71.6
0.49
0.9
67.2
38.3
Minor 5ss
37.5
-1.4
3.3
49.3
46.4
Minor BPS
76.9
0.84
1.3
83.04
30.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010487
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023255
8573685 - 8622228
48544
ENSAPLT00000020607
8518659 - 8621647
102989
ENSAPLT00000019632
8587261 - 8621647
34387
ENSAPLT00000010949
8553282 - 8622228
68947
ENSAPLT00000034771
8590432 - 8621647
31216