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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8612326_8619340_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8612326 - 8619340
Intron Length:
7015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTGTTTTAAAC
Flanking Amino Acid:
VGGRNAAGELATVECYNPRM
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
85.2
32.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.5
0.6
1
74.1
39.5
Minor 5ss
42.3
-0.9
3.5
64.1
47.4
Minor BPS
65.8
0.48
1.5
74.65
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010487
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020607
8518659 - 8621647
102989
ENSAPLT00000019632
8587261 - 8621647
34387
ENSAPLT00000010949
8553282 - 8622228
68947
ENSAPLT00000034771
8590432 - 8621647
31216
ENSAPLT00000023255
8573685 - 8622228
48544