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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8782820_8783586_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8782820 - 8783586
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCATTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCATTTTAATA
Flanking Amino Acid:
WFFLTPVLLVAILVWSLVTF
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
72.3
0.5
0.9
69
35.7
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
59.7
0.3
1.3
62.56
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010273
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038800
8781934 - 8809609
27676
ENSAPLT00000010761
8781934 - 8795502
13569