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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8783697_8783917_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8783697 - 8783917
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGTTTTTCAACA
Flanking Amino Acid:
LEIIGIVYIYGGNRFIEDIE
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.1
0.7
0.9
77.7
35.5
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
67
0.53
1.5
75.9
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010273
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038800
8781934 - 8809609
27676
ENSAPLT00000010761
8781934 - 8795502
13569