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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8785347_8785445_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8785347 - 8785445
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTCTGTTCAAAA
Flanking Amino Acid:
LGLDSQFATIETLTTTIQDI
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
82.9
0.74
0.7
76.7
25.3
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
48.5
-0.1
2
64.41
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010273
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038800
8781934 - 8809609
27676
ENSAPLT00000010761
8781934 - 8795502
13569