About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8794791_8795451_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8794791 - 8795451
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGATG
5'SS Class:
major
3'SS Sequence:
CTTCTCTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTCAT
U12 Branch Point Sequence:
TGATCCTGAGTC
Flanking Amino Acid:
GFLSCGKKKKDFSLSSEKDA
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.5
42.7
Major BPS
59.3
0.23
1.4
63.4
44.3
Major PPT
72.1
0.5
1
70.9
33.6
Minor 5ss
29
-2.4
3.4
38.2
47
Minor BPS
55.3
0.15
1.7
65.44
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010273
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010761
8781934 - 8795502
13569