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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8811093_8811399_F

Intron Information:

Intron Rank:
142477
Intron Class:
major
Intron Phase:
Intron Coordinates:
8811093 - 8811399
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAAT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.7
37
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
27.1
-2.6
3.3
38.2
47
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026759
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027949
8810275 - 8811548
1274