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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_8821950_8824302_R

Intron Information:

Intron Rank:
155216
Intron Class:
major
Intron Phase:
Intron Coordinates:
8821950 - 8824302
Intron Length:
2353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGG
5'SS Class:
major
3'SS Sequence:
TTCCTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAC
U12 Branch Point Sequence:
TTCCTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
54.8
44.8
Major BPS
58.3
0.21
1.1
61.1
36.4
Major PPT
84
0.76
0.7
79.2
26.4
Minor 5ss
34.4
-1.8
3.5
46.9
48.5
Minor BPS
60.7
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030997
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045835
8821867 - 8834336
12470
ENSAPLT00000043064
8821867 - 8831689
9823
ENSAPLT00000033190
8821867 - 8832611
10745